View source for Change-the-MySQL-Timeout-on-a-Server

MySQL server timeout can occur for many reasons, but happens most often when a command is sent to MySQL over a closed connection. The connection could have been closed by the MySQL server because of an idle-timeout; however, in most cases it is caused by either an application bug, a network timeout issue (on a firewall, router, etc.), or due to the MySQL server restarting. Rarely does the wait_timeout value cause the problem, and changing the value does not fix the problem. For cases where an application fails to close a connection it is no longer using, a low wait_timeout value can help to avoid hitting max_connections simply due to “sleeping” idle connections that are not in a transaction and will not be reused.

Follow these steps to resolve the issue:

1. Log in to your server using SSH.

2. Edit my.cnf (the MySQL configuration file).
<pre style="color: red">sudo vi /etc/my.cnf
</pre>

3. Locate the timeout configuration and adjust it to fit your server.
<pre style="color: red">wait_timeout = 28800
interactive_timeout = 28800
</pre>
:* The interactive timeout does not affect any web application connections. A high interactive_timeout but a low wait_timeout is normal and is the best practice.

:* Choose a reasonable wait_timeout value. Stateless PHP environments do well with a 60 second timeout or less. Stateful applications that use a connection pool (Java, .NET, etc.) will need to adjust wait_timeout to match their connection pool settings. The default 8 hours (wait_timeout = 28800) works well with properly configured connection pools.

:* Configure the wait_timeout to be slightly longer than the application connection pool’s expected connection lifetime. This is a good safety check.

:* Consider changing the wait_timeout value online. This does not require a MySQL restart, and the wait_timeout can be adjusted in the running server without incurring downtime. You would issue set global wait_timeout=60 and any new sessions created would inherit this value. Be sure to preserve the setting in my.cnf. Any existing connections will need to hit the old value of wait_timeout if the application abandoned the connection. If you do have reporting jobs that will do longer local processing while in a transaction, you might consider having such jobs issue set session wait_timeout=3600 upon connecting.

4. Save the changes and exit the editor.

5. Restart MySQL to apply the changes as follows:
<pre style="color: red">sudo /etc/init.d/mysql restart
</pre>

Once the restart completes, the new changes are applied.